程序安装教程

一、 apt-get source update

1. apt-get source change the /etc/apt/sources.list file to aliyun source
2. add sudo user in rootlink

   1	adduser [name]

   1	apt-get install sudo

   赋予用户sudo权限:

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   sudo usermod -a -G adm username sudo usermod -a -G sudo username su [name]

   在文件/etc/sudoers中更改用户的sudo权限:

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   # sudoers file. # # This file MUST be edited with the 'vi sudo' command as root. # # See the sudoers man page for the details on how to write a sudoers file. # # Host alias specification # User alias specification # Cmnd alias specification # Defaults specification # User privilege specification root ALL=(ALL) ALL [username] ALL=(ALL) ALL # Uncomment to allow people in group wheel to run all commands # %wheel ALL=(ALL) ALL # Same thing without a password # %wheel ALL=(ALL) NOPASSWD: ALL # Samples # %users ALL=/sbin/mount /cdrom,/sbin/umount /cdrom # %users localhost=/sbin/shutdown -h now

二、 Anaconda or Miniconda Installation

1. download anaconda or miniconda from tsinghua source website

   download command:

   1	wget https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda3-latest-Linux-x86_64.sh

   run the command to install:

   1	bash Miniconda3-latest-linux-x86_64.sh

2. change the conda channels to tsinghua source

   1	nano ~/.condarc

   paste the following channels into your ~/.condarc file:ref link

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   conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/ conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/ #Conda Forge conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/ #msys2（可略） conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/msys2/ #bioconda（可略） conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/ #menpo（可略） conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/menpo/ #pytorch conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/pytorch/ # for legacy win-64（可略） conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/peterjc123/ conda config --set show_channel_urls yes

3. anaconda 环境文件environment.yml使用参考 创建环境:

   1	conda env create -f environment.yml -n myenv

   导出当前环境配置:

   1	conda env export > environment.yml

   更新环境:

   1	conda env update -f environment.yml

三、 Cmake Installation

Ref Link

1. Download cmake source file:

   1	wget https://cmake.org/files/v3.20/cmake-3.20.0-linux-x86_64.tar.gz

2. extract the file and move the file to /opt/cmake-3.20.0

   1 2	tar zxvf cmake-3.20.0-linux-x86_64.tar.gz mv cmake-3.20.0-linux-x86_64 /opt/cmake-3.20.0

3. link the cmake as system cmake

   1	ln -sf /opt/cmake-3.20.0/bin/* /usr/bin/

4. check if successfully installed

   1	cmake --version

四、 Openmpi Installation

Ref Link

1. Install openmpi with command line:

   1	sudo apt-get install openmpi-bin openmpi-doc libopenmpi-dev

2. 在conda下安装openmapi:

   1	conda install openmpi

五、 Anaconda下安装jupyter notebook

1. 安装jupyter notebook

   1	pip install jupyter notebook==6.1.0

2. 安装nbextensions

   1 2	pip install jupyter_contrib_nbextensions jupyter contrib nbextension install --user

   如果遇到如下报错信息:

   1	ModuleNotFoundError: No module named 'notebook.base'

   注意: 一般由于notebook版本>=7.0.0导致 原因: Notebook的版本太高了，将notebook的版本降到6.1.0

   1 2	pip install jupyter notebook==6.1.0 # 或者 pip install --upgrade notebook==6.1.0

   然后再重新安装插件。

3. 安装nbextensions_configurator

   1 2	pip install jupyter_nbextensions_configurator jupyter nbextensions_configurator enable --user

4. 启动jupyter Notebook

   1	jupyter notebook

   若如下报错:

   1 2	ModuleNotFoundError: No module named 'jupyter_server.contents' TypeError: warn() missing 1 required keyword-only argument: 'stacklevel'

   则执行以下命令安装traitlets库:

   1	pip install traitlets==5.9.0

5. 在codemirror.css文件中更改字体 文件路径: /home/{$USERNAME}/miniconda3/envs/pytorch/lib/python3.8/site-packages/notebook/static/components/codemirror/lib/codemirror.css

6. 推荐安装的几个jupyter插件:

   • zenmode
   • table of content(2)
   • Autopep8
   • variable inspector
   • ExecuteTime
   • Hide input all 隐藏代码输入

7. jupyter notebook v7.0 extension installation support: https://github.com/jupyter/notebook/discussions/6881